This is a one stop portal that provides information and link to all biomedical computing resources within Singapore.    

 

 

Grid-Enabled Tools
 

About GET :

A suite of tools for annotation extraction and sequence analysis. The system allows batch submission and processing. Users are able to submit jobs to our computing resources via a web interface.

GetAnno:
Grid Enabled Tools for annotation extraction allow users to:

    1. perform sequence similarity searches against curated databases such as RefSeq, Swissprot, Pfam and Gene ontology.
    2. obtain the annotation obtained from the results description in an excel spreadsheet output.

GetEMBOSS :
Grid Enabled Tools for sequence analysis using EMBOSS allow users to perform several sequence analysis options on a batch of sequences submitted.

GetMSA:
Grid Enabled Tools for Multiple Sequence Alignment allow users to align multiple sequences for comparison and select further analysis options of predicting secondary structure and finding domains for those conserved regions.

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Singapore Mirrored Tools
Database Searching
  • Sequence Retrieval System
  • SingBLAST
  • UCSC Genome Browser
  • Cat Crawler
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    Sequence Analysis
  • ClustalW 
  • InterProScan
  • EMBOSS 
  • Sequence Manipulation Suite
  • Wisconsin Package (SeqWeb)
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    Upcoming Events
  • 30 to 31 May Bioinformatics Workshop
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    Updates
  • Life Sciences Database Directory Service System updated
  • InterProScan added
  • Singapore Human Mutation and Polymorphism Database added
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    Acknowledgement

    We would like to thank all our National Grid (Life Sciences) Community members for their contributions to this website.

     
     
    Contact us if you would like to other resources / data to be included here.
     
     

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